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Validated Exons


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Symbol Name in Fig.4 Gene Name Synaptic Function Interaction Partners Exon Nova-2 wt/ko cortex Nova-1 wt/ko sc cx/sc brain/ non-brain
ΔI Fold Change ΔI
Chip Chip PCR PCR Chip PCR
<< sort
Clasp1 Clasp1 CLIP associating protein 1 Cytoskeleton binding 12   E9 0.37 0.34 0.44
7.00
  0.03 0.20 0.62
Igsf4a Syncam immunoglobulin superfamily, member 4A (SynCam) Cell-cell adhesion 32 CASK ; 4.1B E8 -0.36
- 0.38
- 0.23
7.00
- 0.03
- 0.15
- 0.05
- 0.48
Arhgap21 Arhgap21 Rho GTPase activating protein 21 (no data in brain)   E8 0.37 0.42 0.18
2.30
  0.01 0.19  
Chl1 Chl1 close homolog of L1 Cell-cell adhesion 13 Ankyrin G E7a -0.57
- 0.75
- 0.79
127.00
- 0.03
0.02
- 0.06
 
Gphn gephyrin gephyrin Receptor localization 16 GABAARg2 ; GlyRa2 E7a
- 0.45
- 0.69
59.00
- 0.04
- 0.07
- 0.03
- 0.73
Lrp1b   low density lipoprotein-related protein 1B (deleted in tumors) (no data in brain)   E79 0.21 0.39 0.47
11.00
0.03 0.02 0.06  
Lrp12   low density lipoprotein-related protein 12 / suppression of tumorigenicity 7 (St7) (no data in brain)   E7 0.30 0.63
19.00
- 0.01
0.06 0.24 0.55
Mapk9 JNK2 mitogen activated protein kinase 9 (JNK2) Signaling 23 APLP2 ; Nik E6a   0.42
6.28
  0.00
- 0.32
0.58
Tpm3 Tpm3 tropomyosin 3, gamma Cytoskeleton binding 33   E6a 0.24 0.31 0.43
7.00
   
- 0.18
0.53
Tpm3 Tpm3 tropomyosin 3, gamma Cytoskeleton binding 33   E6 -0.31
- 0.35
- 0.43
7.00
     
- 0.6
Ntng1 netrin G1 netrin G1 Axon guidance 22   E5a
- 0.32
- 0.26
3.50
  0.04
- 0.05
 
Epha5 ephrinA5R Ephrin receptor A5 Cell-cell adhesion 15 EphrinA5 E4a 0.29 0.24 0.58
15.00
0.02 0.05 0.13 0.38
Spna2 spectrin a2 spectrin alpha 2 Receptor localization 31 Ankyrin G ; Catenin a2 ; Spectrin 4.1R, 4.1G, 4.1B E4 0.36 0.35 0.46
12.00
0.06  
- 0.2
 
Falz   fetal Alzheimer antigen / nucleosome remodeling factor, large subunit (FAC1/BPTF/NURF301) Transcription 25   E4 0.22 0.22 0.13
5.00
0.14 0.11 0.04 0.16
Efna5 ephrinA5 ephrin A5 Cell-cell adhesion 14 EphrinA5R E3a -0.23
- 0.1
- 0.17
3.00
  0.03
- 0.08
 
Plcb4 PLCb4 phospholipase C, beta 4 Signaling 26   E36a -0.25
- 0.31
- 0.64
22.00
- 0.03
- 0.07
0.02
- 0.73
Atp2b1 PMCA1 ATPase, Ca++ transporting, plasma membrane 1 (PMCA1) Neurotransmiter release 27 CASK E35 0.56 0.56 0.70
34.59
0.15 0.20 0.09 0.88
Atp2b1 PMCA1 ATPase, Ca++ transporting, plasma membrane 1 (PMCA1) Neurotransmiter release 27 CASK E34 0.61 0.61 0.47
23.82
  0.18 0.15 0.95
Agrn agrin agrin Receptor localization 4   E31b 0.20 0.27 0.24
3.40
0.01
- 0.01
- 0.02
0.14
Agrn agrin agrin Receptor localization 4   E31a 0.40 0.45 0.24
8.00
 
- 0.02
- 0.06
0.29
Stxbp2 Munc18 syntaxin binding protein 2 (Munc18) Neurotransmiter release 21 CASK E3 -0.14
- 0.16
- 0.22
2.80
0.00 0.06
- 0.25
- 0.74
Neo1 neogenin neogenin Axon guidance 36   E27  
- 0.69
34.00
 
- 0.24
0.02
- 0.53
Rap1ga1 Rap1GAP Rap1, GTPase-activating protein 1 Signaling 28   E27 -0.44
- 0.47
- 0.33
5.00
- 0.03
  0.18  
Cacna1b Cav2.2 calcium channel, voltage-dependent, N type, alpha 1B subunit (Cav2.2) Signaling 8 CASK E24a 0.59 0.51 0.46
9.00
- 0.02
0.04
- 0.12
 
Kcnma1 Slo potassium large conductance calcium-activated channel M, alpha 1 (Slo, MaxiK, BK) Neurotransmiter release 30   E24a 0.34 0.36 0.40
6.00
  0.00
- 0.09
 
Chl1 Chl1 close homolog of L1 Cell-cell adhesion 13 Ankyrin G E24 0.28 0.33 0.36
13.00
0.03
- 0.08
0.23
- 0.07
Map4k4 Nik/Map4k4 mitogen-activated protein kinase kinase kinase kinase 4 / NCK interacting kinase (Nik) Signaling 23 JNK2 E22a -0.15
- 0.29
- 0.15
2.10
     
- 0.23
Golga4   golgi autoantigen, golgin subfamily a 4 (golgin-245) (no data in brain)   E22a 0.25 0.23 0.08
5.00
0.05 0.02 0.03 0.15
Gpr45   G protein-coupled receptor 45 (no data in brain)   E2 -0.30
- 0.33
- 0.74
50.00
0.01 0.08 0.00  
Srr   serine racemase NMDA receptor regulation 29   E2 -0.37
- 0.25
- 0.49
15.00
- 0.08
0.00
- 0.56
- 0.41
Page 1 of 2 Showing rows 1 - 30 (53 total)
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